Install SAIGE from bioconda

Recent versions of SAIGE are distributed through bioconda with exclusively linux support. Mac OS support may be possible through other installation methods.

To install saige from bioconda simply create environment with latest version of R and saige:

conda create -n saige -c conda-forge -c bioconda r-saige
conda activate saige

The installation will place the scripts in extdata/ into your conda environment’s PATH.

More info on r-saige conda package and available versions can be found in the issue #272.